[Header]
GSGT Version	1.8.4
Processing Date	20-Jul-11 3:58 PM
Content		Immuno_BeadChip_11419691_B.bpm
Num SNPs	196524
Total SNPs	196524
Num Samples	96
Total Samples	96
[Data]
SNP Name	Sample ID	Allele1 - Top	Allele2 - Top	GC Score	Sample Name	Sample Group	Sample Index	SNP Index	SNP Aux	Allele1 - Forward	Allele2 - Forward	Allele1 - Design	Allele2 - Design	Allele1 - AB	Allele2 - AB	Allele1 - Plus	Allele2 - Plus	Chr	Position	GT Score	Cluster Sep	SNP	ILMN Strand	Customer Strand	Top Genomic Sequence	Plus/Minus Strand	Theta	R	X	Y	X Raw	Y Raw	B Allele Freq	Log R Ratio	CNV Value	CNV Confidence
1-159076491-G-DELETION	5180	D	I	0.7763	5180		1	1	0	D	I	D	I	A	B	-	-	1	159076491	0.7755	1.0000	[D/I]	PLUS	PLUS			0.544	1.366	0.635	0.731	17792	17130	0.5383	0.0173		
1-159093319-A-DELETION	5180	I	I	0.7509	5180		1	2	0	I	I	I	I	A	A	-	-	1	159093319	0.8006	0.5825	[I/D]	MINUS	PLUS			0.081	0.158	0.140	0.018	4915	1704	0.0095	-0.2534		
1-159105568-A-INSERTION	5180	I	I	0.8493	5180		1	3	0	I	I	I	I	A	A	-	-	1	159105568	0.8231	1.0000	[I/D]	PLUS	PLUS			0.005	1.405	1.394	0.011	36534	1848	0.0000	0.0561		
1-159106812-CT-INSERTION	5180	I	I	0.8888	5180		1	4	0	I	I	I	I	B	B	-	-	1	159106812	0.8538	1.0000	[D/I]	PLUS	PLUS			0.981	1.075	0.031	1.045	2609	23015	0.9964	0.1061		
1-159109349-TT-INSERTION	5180	I	I	0.9596	5180		1	5	0	I	I	I	I	A	A	-	-	1	159109349	0.9298	1.0000	[I/D]	PLUS	PLUS			0.032	0.548	0.522	0.026	14548	1976	0.0162	-0.2325		
1-159122784-A-DELETION	5180	I	I	0.8946	5180		1	6	0	I	I	I	I	A	A	-	-	1	159122784	0.8588	0.8048	[I/D]	PLUS	PLUS			0.032	0.248	0.236	0.012	7329	1599	0.0012	-0.1595		
1-67430247-A-DELETION	5180	I	D	0.9378	5180		1	7	0	I	D	I	D	A	B	-	-	1	67430247	0.9019	1.0000	[I/D]	PLUS	PLUS			0.549	1.037	0.478	0.559	13740	13400	0.5582	0.0655		
1-67450373-G-INSERTION	5180	I	I	0.9281	5180		1	8	0	I	I	I	I	B	B	-	-	1	67450373	0.8911	0.9800	[D/I]	MINUS	PLUS			0.970	0.677	0.031	0.646	2490	15170	0.9938	0.1325		
1-67452531-T-INSERTION	5180	D	D	0.9555	5180		1	9	0	D	D	D	D	B	B	-	-	1	67452531	0.9242	1.0000	[I/D]	MINUS	PLUS			0.964	0.683	0.036	0.647	2636	15188	1.0000	0.2301		
1-67466223-TT-DELETION	5180	-	-	0.0000	5180		1	10	0	-	-	-	-	-	-	-	-	1	67466223	0.0000	0.0000	[I/D]	PLUS	PLUS			0.079	0.155	0.138	0.017	4860	1691	0.0000	-0.0208		
1-67468820-ATT-DELETION	5180	I	I	0.7270	5180		1	11	0	I	I	I	I	A	A	-	-	1	67468820	0.7471	1.0000	[I/D]	PLUS	PLUS			0.010	1.875	1.845	0.030	47936	2351	0.0000	0.0097		
1-67477526-G-INSERTION	5180	D	D	0.4952	5180		1	12	0	D	D	D	D	A	A	-	-	1	67477526	0.8910	1.0000	[D/I]	PLUS	PLUS			0.051	0.181	0.167	0.013	5597	1616	0.0000	-0.4678		
1-67499692-A-DELETION	5180	I	I	0.5782	5180		1	13	0	I	I	I	I	A	A	-	-	1	67499692	0.7032	0.4905	[I/D]	PLUS	PLUS			0.148	0.204	0.165	0.039	5621	2247	0.0290	-0.5374		
1-67511371-CT-DELETION	5180	D	I	0.9218	5180		1	14	0	D	I	D	I	A	B	-	-	1	67511371	0.8845	1.0000	[D/I]	PLUS	PLUS			0.525	0.889	0.427	0.462	12391	11301	0.5065	-0.0973		
1-67540417-GA-DELETION	5180	I	I	0.4480	5180		1	15	0	I	I	I	I	A	A	-	-	1	67540417	0.8531	0.9552	[I/D]	MINUS	PLUS			0.062	0.235	0.214	0.021	6782	1786	0.0000	0.1205		
1_100454174	5180	C	C	0.5124	5180		1	16	0	G	G	G	G	B	B	-	-	1	100454174	0.9044	1.0000	[T/G]	BOT	BOT			0.986	1.153	0.024	1.129	2476	24755	0.9955	-0.0079		
1_101112493	5180	C	C	0.5176	5180		1	17	0	C	C	G	G	B	B	-	-	1	101112493	0.9084	1.0000	[T/G]	BOT	TOP			0.986	0.997	0.022	0.975	2391	21576	1.0000	0.0436		
1_108093649	5180	C	C	0.3023	5180		1	18	0	G	G	C	C	B	B	-	-	1	108093649	0.7170	0.8241	[A/C]	TOP	BOT			0.929	0.924	0.093	0.831	4065	18602	1.0000	-0.0597		
1_109097242	5180	T	T	0.4303	5180		1	19	0	T	T	A	A	B	B	-	-	1	109097242	0.8384	1.0000	[T/A]	BOT	TOP			0.955	0.713	0.047	0.666	2889	17205	1.0000	-0.2222		
1_109167514	5180	G	G	0.4488	5180		1	20	0	C	C	C	C	B	B	-	-	1	109167514	0.8538	1.0000	[T/C]	BOT	BOT			0.943	0.962	0.080	0.882	3749	19665	0.9895	-0.0589		
1_109178674	5180	C	C	0.3992	5180		1	21	0	C	C	C	C	B	B	-	-	1	109178674	0.8115	1.0000	[A/C]	TOP	TOP			0.982	1.355	0.037	1.318	2808	28661	1.0000	-0.0362		
1_10932266	5180	G	G	0.8395	5180		1	22	0	G	G	G	G	B	B	-	-	1	10932266	0.8161	1.0000	[A/G]	TOP	TOP			0.967	1.608	0.079	1.529	3876	33025	0.9948	0.0317		
1_109452081	5180	C	C	0.6570	5180		1	23	0	G	G	G	G	B	B	-	-	1	109452081	0.7467	0.3959	[T/G]	BOT	BOT			0.987	1.165	0.023	1.142	2455	25021	1.0000	-0.0616		
1_110707929	5180	G	G	0.4368	5180		1	24	0	C	C	C	C	B	B	-	-	1	110707929	0.8438	0.6350	[T/C]	BOT	BOT			0.925	0.453	0.048	0.406	2890	9808	0.9888	-0.3076		
1_111470371	5180	C	C	0.5296	5180		1	25	0	C	C	G	G	B	B	-	-	1	111470371	0.9176	1.0000	[T/G]	BOT	TOP			0.990	0.673	0.010	0.663	2041	15120	1.0000	-0.1491		
1_113034078	5180	C	C	0.4898	5180		1	26	0	C	C	G	G	B	B	-	-	1	113034078	0.8868	1.0000	[T/G]	BOT	TOP			0.973	0.922	0.038	0.884	2749	19700	0.9985	-0.3247		
1_113044737	5180	G	G	0.9010	5180		1	27	0	C	C	G	G	B	B	-	-	1	113044737	0.9100	1.0000	[A/G]	TOP	BOT			0.981	1.138	0.033	1.105	2680	24259	0.9985	0.1339		
1_113056157	5180	C	C	0.3868	5180		1	28	0	C	C	G	G	B	B	-	-	1	113056157	0.8004	1.0000	[T/G]	BOT	TOP			0.976	1.408	0.051	1.357	3163	29466	1.0000	-0.0599		
1_115037580	5180	G	G	0.9410	5180		1	29	0	G	G	G	G	B	B	-	-	1	115037580	0.9057	1.0000	[A/G]	TOP	TOP			0.969	0.597	0.028	0.569	2447	13184	0.9944	0.2157		
1_1168711	5180	G	G	0.7537	5180		1	30	0	G	G	G	G	B	B	-	-	1	1168711	0.8023	0.9241	[A/G]	TOP	TOP			0.977	1.502	0.053	1.449	3228	31381	1.0000	-0.0754		
1_11893843	5180	G	G	0.8717	5180		1	31	0	C	C	G	G	B	B	-	-	1	11893843	0.8840	1.0000	[C/G]	TOP	BOT			0.973	0.691	0.028	0.663	2241	15082	0.9953	-0.1704		
1_120138308	5180	A	A	0.8448	5180		1	32	0	T	T	T	T	A	A	-	-	1	120138308	0.8198	1.0000	[T/C]	BOT	BOT			0.020	1.948	1.888	0.060	46971	2971	0.0000	0.1260		
1_1209245	5180	C	C	0.5002	5180		1	33	0	C	C	G	G	A	A	-	-	1	1209245	0.8949	1.0000	[G/C]	BOT	TOP			0.010	0.901	0.887	0.013	21668	2214	0.0000	0.1904		
1_1244118	5180	G	G	0.7179	5180		1	34	0	G	G	G	G	B	B	-	-	1	1244118	0.7420	1.0000	[A/G]	TOP	TOP			0.977	1.514	0.052	1.462	3206	31648	0.9993	0.0103		
1_12793169	5180	A	A	0.5298	5180		1	35	0	A	A	A	A	A	A	-	-	X	12793169	0.9178	1.0000	[A/G]	TOP	TOP			0.004	0.836	0.831	0.005	21604	1662	0.0000	0.2608		
1_143787040	5180	-	-	0.0000	5180		1	36	0	-	-	-	-	-	-	-	-	1	143787040	0.0000	0.0000	[T/C]	BOT	BOT			0.479	1.533	0.792	0.741	20826	16863	0.8752	-0.2716		
1_144270299	5180	G	G	0.7665	5180		1	37	0	G	G	G	G	B	B	-	-	1	144270299	0.8102	0.9781	[A/G]	TOP	TOP			0.980	1.379	0.043	1.337	2960	29047	1.0000	0.0900		
1_149327618	5180	G	G	0.4735	5180		1	38	0	G	G	G	G	B	B	-	-	1	149327618	0.8738	0.9333	[A/G]	TOP	TOP			0.966	0.766	0.038	0.728	2730	16459	1.0000	0.0158		
1_149555179	5180	C	C	0.4197	5180		1	39	0	C	C	C	C	B	B	-	-	1	149555179	0.8293	1.0000	[A/C]	TOP	TOP			0.995	1.786	0.013	1.773	2331	38054	0.9994	0.1026		
1_149640924	5180	C	C	0.4451	5180		1	40	0	G	G	G	G	B	B	-	-	1	149640924	0.8507	1.0000	[T/G]	BOT	BOT			0.956	1.138	0.074	1.064	3642	23427	0.9962	-0.0798		
1_149769217	5180	A	A	0.4468	5180		1	41	0	T	T	A	A	A	A	-	-	1	149769217	0.8521	1.0000	[A/C]	TOP	BOT			0.071	1.249	1.123	0.126	28628	4202	0.0155	0.1138		
1_150551510	5180	G	G	0.6690	5180		1	42	0	G	G	G	G	B	B	-	-	1	150551510	0.7534	0.9805	[A/G]	TOP	TOP			0.960	1.354	0.080	1.273	3849	27750	1.0000	-0.2567		
1_150589756	5180	C	C	0.7734	5180		1	43	0	G	G	G	G	B	B	-	-	1	150589756	0.7738	1.0000	[T/G]	BOT	BOT			0.968	1.096	0.053	1.044	3136	22992	1.0000	-0.1725		
1_150649173	5180	G	G	0.3992	5180		1	44	0	G	G	G	G	B	B	-	-	1	150649173	0.8115	1.0000	[A/G]	TOP	TOP			0.983	1.595	0.042	1.554	2975	33536	1.0000	-0.1437		
1_152018355	5180	G	G	0.7638	5180		1	45	0	C	C	G	G	B	B	-	-	1	152018355	0.8085	1.0000	[A/G]	TOP	BOT			0.962	1.674	0.095	1.579	4258	34064	0.9847	-0.0659		
1_152512993	5180	G	G	0.3471	5180		1	46	0	G	G	G	G	B	B	-	-	1	152512993	0.7631	0.6897	[A/G]	TOP	TOP			0.957	1.482	0.094	1.388	4189	30118	1.0000	0.0741		
1_152514361	5180	G	G	0.2041	5180		1	47	0	G	G	G	G	B	B	-	-	1	152514361	0.5910	0.5534	[A/G]	TOP	TOP			0.708	1.685	0.557	1.128	15252	24820	0.9596	0.0712		
1_153281957	5180	G	G	0.7686	5180		1	48	0	G	G	G	G	B	B	-	-	1	153281957	0.8115	1.0000	[A/G]	TOP	TOP			0.978	1.432	0.048	1.385	3083	30042	1.0000	-0.0260		
1_156593177	5180	G	G	0.4813	5180		1	49	0	G	G	G	G	B	B	-	-	1	156593177	0.8800	1.0000	[A/G]	TOP	TOP			0.971	0.942	0.041	0.901	2838	20038	1.0000	0.1492		
1_156716766	5180	G	G	0.8982	5180		1	50	0	C	C	C	C	B	B	-	-	1	156716766	0.9073	1.0000	[T/C]	BOT	BOT			0.977	1.005	0.034	0.971	2685	21488	0.9958	-0.0727		
1_157013236	5180	G	G	0.8394	5180		1	51	0	G	G	C	C	B	B	-	-	1	157013236	0.8590	1.0000	[T/C]	BOT	TOP			0.961	1.034	0.060	0.974	3300	21550	0.9833	0.0499		
1_157084221	5180	G	G	0.8979	5180		1	52	0	G	G	G	G	B	B	-	-	1	157084221	0.9070	1.0000	[A/G]	TOP	TOP			0.986	0.818	0.018	0.800	2261	17951	1.0000	-0.0946		
1_158091588	5180	A	A	0.6744	5180		1	53	0	A	A	A	A	A	A	-	-	1	158091588	0.7564	1.0000	[A/G]	TOP	TOP			0.068	1.577	1.424	0.153	35862	4822	0.0000	-0.1991		
1_158519357	5180	G	G	0.7445	5180		1	54	0	C	C	C	C	B	B	-	-	1	158519357	0.7968	0.8981	[T/C]	BOT	BOT			0.979	1.146	0.037	1.109	2784	24335	1.0000	-0.2889		
1_159054708	5180	G	G	0.7070	5180		1	55	0	G	G	G	G	B	B	-	-	1	159054708	0.7748	0.9972	[A/G]	TOP	TOP			0.944	1.600	0.129	1.471	5055	31832	0.9986	-0.1401		
1_159359477	5180	G	G	0.7445	5180		1	56	0	G	G	G	G	B	B	-	-	1	159359477	0.7968	0.9083	[A/G]	TOP	TOP			0.979	1.363	0.043	1.320	2958	28699	1.0000	-0.0842		
1_159430210	5180	C	C	0.4596	5180		1	57	0	C	C	C	C	B	B	-	-	1	159430210	0.8626	0.8807	[A/C]	TOP	TOP			0.964	0.446	0.024	0.423	2315	10158	1.0000	0.4175		
1_159747336	5180	G	G	0.4777	5180		1	58	0	G	G	G	G	B	B	-	-	1	159747336	0.8771	1.0000	[A/G]	TOP	TOP			0.987	1.139	0.023	1.117	2429	24505	1.0000	-0.0638		
1_160148709	5180	C	C	0.5191	5180		1	59	0	G	G	C	C	B	B	-	-	1	160148709	0.9096	1.0000	[A/C]	TOP	BOT			0.977	1.043	0.036	1.007	2724	22244	0.9966	0.0069		
1_16597858	5180	G	G	0.6943	5180		1	60	0	G	G	C	C	B	B	-	-	1	16597858	0.7676	0.8458	[T/C]	BOT	TOP			0.929	0.783	0.079	0.704	3693	15987	0.9768	-0.0407		
1_167363130	5180	-	-	0.0000	5180		1	61	0	-	-	-	-	-	-	-	-	1	167363130	0.0000	0.0000	[A/G]	TOP	BOT			0.353	2.602	1.607	0.995	40425	22245	0.0000	0.1894		
1_169379114	5180	A	G	0.9454	5180		1	62	0	T	C	A	G	A	B	-	-	1	169379114	0.9111	1.0000	[A/G]	TOP	BOT			0.463	1.001	0.530	0.471	14469	11236	0.5050	0.1879		
1_169521212	5180	G	G	0.7987	5180		1	63	0	C	C	G	G	B	B	-	-	1	169521212	0.8308	0.8458	[A/G]	TOP	BOT			0.952	0.805	0.057	0.748	3180	16891	1.0000	0.1158		
1_170678325	5180	G	G	0.8943	5180		1	64	0	G	G	C	C	B	B	-	-	1	170678325	0.9037	1.0000	[T/C]	BOT	TOP			0.988	1.015	0.018	0.997	2306	22026	1.0000	0.2057		
1_170688829	5180	C	C	0.8485	5180		1	65	0	C	C	C	C	B	B	-	-	1	170688829	0.8225	1.0000	[A/C]	TOP	TOP			0.980	1.370	0.043	1.328	2952	28862	0.9990	-0.0197		
1_171745360	5180	T	T	0.5446	5180		1	66	0	A	A	T	T	B	B	-	-	1	171745360	0.9290	1.0000	[A/T]	TOP	BOT			0.997	0.621	0.003	0.619	1723	14180	1.0000	-0.1290		
1_171793211	5180	G	G	0.4069	5180		1	67	0	C	C	C	C	B	B	-	-	1	171793211	0.8183	1.0000	[T/C]	BOT	BOT			0.938	1.018	0.091	0.927	4034	20588	1.0000	-0.0368		
1_176780788	5180	A	G	0.3283	5180		1	68	0	T	C	T	C	A	B	-	-	1	176780788	0.5210	0.4052	[T/C]	BOT	BOT			0.620	1.973	0.798	1.175	21051	25838	0.5153	-0.0850		
1_177870317	5180	C	C	0.4481	5180		1	69	0	C	C	G	G	B	B	-	-	1	177870317	0.8532	0.7187	[T/G]	BOT	TOP			0.970	1.148	0.052	1.096	3137	24073	1.0000	0.1225		
1_178125067	5180	A	G	0.9366	5180		1	70	0	A	G	T	C	A	B	-	-	1	178125067	0.9005	1.0000	[T/C]	BOT	TOP			0.517	1.341	0.652	0.689	17448	15757	0.5114	0.1821		
1_183356179	5180	C	C	0.5236	5180		1	71	0	G	G	C	C	B	B	-	-	1	183356179	0.9130	1.0000	[A/C]	TOP	BOT			0.988	1.048	0.019	1.029	2337	22681	1.0000	-0.1001		
1_18680816	5180	G	G	0.8967	5180		1	72	0	C	C	C	C	B	B	-	-	1	18680816	0.9059	1.0000	[T/C]	BOT	BOT			0.993	0.866	0.010	0.856	2077	19102	1.0000	-0.2134		
1_1887682	5180	C	C	0.4128	5180		1	73	0	G	G	C	C	B	B	-	-	1	1887682	0.8234	1.0000	[A/C]	TOP	BOT			0.993	1.453	0.016	1.436	2338	31108	1.0000	-0.2278		
1_195024497	5180	-	-	0.0000	5180		1	74	0	-	-	-	-	-	-	-	-	1	195024497	0.0000	0.0000	[A/G]	TOP	TOP			0.841	1.143	0.233	0.911	7427	20281	1.0000	0.0199		
1_195193808	5180	C	C	0.5008	5180		1	75	0	G	G	G	G	B	B	-	-	1	195193808	0.8954	1.0000	[T/G]	BOT	BOT			0.978	0.579	0.020	0.560	2245	12986	1.0000	-0.1721		
1_196492101	5180	A	G	0.7719	5180		1	76	0	A	G	A	G	A	B	-	-	1	196492101	0.8136	1.0000	[A/G]	TOP	TOP			0.536	1.980	0.934	1.046	24287	23197	0.5072	0.0427		
1_196772454	5180	G	G	0.9352	5180		1	77	0	G	G	C	C	B	B	-	-	1	196772454	0.8990	1.0000	[T/C]	BOT	TOP			0.953	0.891	0.061	0.830	3303	18571	0.9812	0.1449		
1_198275504	5180	G	G	0.6651	5180		1	78	0	C	C	G	G	B	B	-	-	1	198275504	0.7512	1.0000	[A/G]	TOP	BOT			0.940	1.826	0.157	1.669	5761	35940	1.0000	-0.0552		
1_199282896	5180	T	T	0.4016	5180		1	79	0	A	A	A	A	B	B	-	-	1	199282896	0.8136	1.0000	[T/A]	BOT	BOT			0.986	1.852	0.039	1.812	2928	43697	1.0000	0.1410		
1_200463744	5180	C	C	0.4014	5180		1	80	0	C	C	C	C	A	A	-	-	1	200463744	0.8134	1.0000	[C/G]	TOP	TOP			0.014	1.431	1.400	0.031	33197	2686	0.0000	-0.0044		
1_201131303	5180	-	-	0.0000	5180		1	81	0	-	-	-	-	-	-	-	-	1	201131303	0.0000	0.0000	[A/G]	TOP	TOP			0.425	2.780	1.555	1.226	39214	27006	0.0000	0.0734		
1_201453573	5180	G	G	0.3317	5180		1	82	0	C	C	C	C	B	B	-	-	1	201453573	0.7478	0.9796	[T/C]	BOT	BOT			0.905	1.051	0.137	0.914	5141	20333	1.0000	-0.2863		
1_202690454	5180	T	T	0.3490	5180		1	83	0	T	T	A	A	B	B	-	-	1	202690454	0.7650	1.0000	[T/A]	BOT	TOP			0.952	1.374	0.097	1.277	4128	31323	1.0000	-0.0039		
1_203298249	5180	C	C	0.4922	5180		1	84	0	C	C	G	G	B	B	-	-	1	203298249	0.6548	0.9141	[T/G]	BOT	TOP			0.859	1.505	0.276	1.229	8544	26856	0.9803	-0.0969		
1_203492080	5180	A	A	0.9342	5180		1	85	0	A	A	A	A	A	A	-	-	1	203492080	0.8978	1.0000	[A/G]	TOP	TOP			0.028	1.093	1.047	0.046	26786	2539	0.0028	-0.0534		
1_20529353	5180	G	G	0.4078	5180		1	86	0	C	C	C	C	B	B	-	-	1	20529353	0.8190	1.0000	[T/C]	BOT	BOT			0.979	1.244	0.039	1.205	2846	26331	0.9963	-0.0897		
1_207867500	5180	C	C	0.3992	5180		1	87	0	C	C	C	C	B	B	-	-	1	207867500	0.8115	1.0000	[A/C]	TOP	TOP			0.975	1.342	0.050	1.292	3125	28119	1.0000	-0.2017		
1_20903554	5180	G	G	0.7673	5180		1	88	0	G	G	C	C	B	B	-	-	1	20903554	0.8107	0.9395	[T/C]	BOT	TOP			0.984	1.544	0.037	1.507	2858	32564	0.9970	0.0179		
1_211052215	5180	G	G	0.7772	5180		1	89	0	G	G	C	C	B	B	-	-	1	211052215	0.8868	0.7613	[T/C]	BOT	TOP			0.885	0.141	0.022	0.119	2210	3878	0.8871	-0.8563		
1_211076006	5180	G	G	0.4873	5180		1	90	0	G	G	G	G	B	B	-	-	1	211076006	0.8848	0.9976	[A/G]	TOP	TOP			0.969	1.133	0.053	1.080	3161	23742	1.0000	0.0952		
1-159076491-G-DELETION	5190	D	I	0.7763	5190		1	1	0	D	I	D	I	A	B	-	-	1	159076491	0.7755	1.0000	[D/I]	PLUS	PLUS			0.544	1.366	0.635	0.731	17792	17130	0.5383	0.0173		
1-159093319-A-DELETION	5190	I	I	0.7509	5190		1	2	0	I	I	I	I	A	A	-	-	1	159093319	0.8006	0.5825	[I/D]	MINUS	PLUS			0.081	0.158	0.140	0.018	4915	1704	0.0095	-0.2534		
1-159105568-A-INSERTION	5190	I	I	0.8493	5190		1	3	0	I	I	I	I	A	A	-	-	1	159105568	0.8231	1.0000	[I/D]	PLUS	PLUS			0.005	1.405	1.394	0.011	36534	1848	0.0000	0.0561		
1-159106812-CT-INSERTION	5190	I	I	0.8888	5190		1	4	0	I	I	I	I	B	B	-	-	1	159106812	0.8538	1.0000	[D/I]	PLUS	PLUS			0.981	1.075	0.031	1.045	2609	23015	0.9964	0.1061		
1-159109349-TT-INSERTION	5190	I	I	0.9596	5190		1	5	0	I	I	I	I	A	A	-	-	1	159109349	0.9298	1.0000	[I/D]	PLUS	PLUS			0.032	0.548	0.522	0.026	14548	1976	0.0162	-0.2325		
1-159122784-A-DELETION	5190	I	I	0.8946	5190		1	6	0	I	I	I	I	A	A	-	-	1	159122784	0.8588	0.8048	[I/D]	PLUS	PLUS			0.032	0.248	0.236	0.012	7329	1599	0.0012	-0.1595		
1-67430247-A-DELETION	5190	I	D	0.9378	5190		1	7	0	I	D	I	D	A	B	-	-	1	67430247	0.9019	1.0000	[I/D]	PLUS	PLUS			0.549	1.037	0.478	0.559	13740	13400	0.5582	0.0655		
1-67450373-G-INSERTION	5190	I	I	0.9281	5190		1	8	0	I	I	I	I	B	B	-	-	1	67450373	0.8911	0.9800	[D/I]	MINUS	PLUS			0.970	0.677	0.031	0.646	2490	15170	0.9938	0.1325		
1-67452531-T-INSERTION	5190	D	D	0.9555	5190		1	9	0	D	D	D	D	B	B	-	-	1	67452531	0.9242	1.0000	[I/D]	MINUS	PLUS			0.964	0.683	0.036	0.647	2636	15188	1.0000	0.2301		
1-67466223-TT-DELETION	5190	-	-	0.0000	5190		1	10	0	-	-	-	-	-	-	-	-	1	67466223	0.0000	0.0000	[I/D]	PLUS	PLUS			0.079	0.155	0.138	0.017	4860	1691	0.0000	-0.0208		
1-67468820-ATT-DELETION	5190	I	I	0.7270	5190		1	11	0	I	I	I	I	A	A	-	-	1	67468820	0.7471	1.0000	[I/D]	PLUS	PLUS			0.010	1.875	1.845	0.030	47936	2351	0.0000	0.0097		
1-67477526-G-INSERTION	5190	D	D	0.4952	5190		1	12	0	D	D	D	D	A	A	-	-	1	67477526	0.8910	1.0000	[D/I]	PLUS	PLUS			0.051	0.181	0.167	0.013	5597	1616	0.0000	-0.4678		
1-67499692-A-DELETION	5190	I	I	0.5782	5190		1	13	0	I	I	I	I	A	A	-	-	1	67499692	0.7032	0.4905	[I/D]	PLUS	PLUS			0.148	0.204	0.165	0.039	5621	2247	0.0290	-0.5374		
1-67511371-CT-DELETION	5190	D	I	0.9218	5190		1	14	0	D	I	D	I	A	B	-	-	1	67511371	0.8845	1.0000	[D/I]	PLUS	PLUS			0.525	0.889	0.427	0.462	12391	11301	0.5065	-0.0973		
1-67540417-GA-DELETION	5190	I	I	0.4480	5190		1	15	0	I	I	I	I	A	A	-	-	1	67540417	0.8531	0.9552	[I/D]	MINUS	PLUS			0.062	0.235	0.214	0.021	6782	1786	0.0000	0.1205		
1_100454174	5190	C	C	0.5124	5190		1	16	0	G	G	G	G	B	B	-	-	1	100454174	0.9044	1.0000	[T/G]	BOT	BOT			0.986	1.153	0.024	1.129	2476	24755	0.9955	-0.0079		
1_101112493	5190	C	C	0.5176	5190		1	17	0	C	C	G	G	B	B	-	-	1	101112493	0.9084	1.0000	[T/G]	BOT	TOP			0.986	0.997	0.022	0.975	2391	21576	1.0000	0.0436		
1_108093649	5190	C	C	0.3023	5190		1	18	0	G	G	C	C	B	B	-	-	1	108093649	0.7170	0.8241	[A/C]	TOP	BOT			0.929	0.924	0.093	0.831	4065	18602	1.0000	-0.0597		
1_109097242	5190	T	T	0.4303	5190		1	19	0	T	T	A	A	B	B	-	-	1	109097242	0.8384	1.0000	[T/A]	BOT	TOP			0.955	0.713	0.047	0.666	2889	17205	1.0000	-0.2222		
1_109167514	5190	G	G	0.4488	5190		1	20	0	C	C	C	C	B	B	-	-	1	109167514	0.8538	1.0000	[T/C]	BOT	BOT			0.943	0.962	0.080	0.882	3749	19665	0.9895	-0.0589		
1_109178674	5190	C	C	0.3992	5190		1	21	0	C	C	C	C	B	B	-	-	1	109178674	0.8115	1.0000	[A/C]	TOP	TOP			0.982	1.355	0.037	1.318	2808	28661	1.0000	-0.0362		
1_10932266	5190	G	G	0.8395	5190		1	22	0	G	G	G	G	B	B	-	-	1	10932266	0.8161	1.0000	[A/G]	TOP	TOP			0.967	1.608	0.079	1.529	3876	33025	0.9948	0.0317		
1_109452081	5190	C	C	0.6570	5190		1	23	0	G	G	G	G	B	B	-	-	1	109452081	0.7467	0.3959	[T/G]	BOT	BOT			0.987	1.165	0.023	1.142	2455	25021	1.0000	-0.0616		
1_110707929	5190	G	G	0.4368	5190		1	24	0	C	C	C	C	B	B	-	-	1	110707929	0.8438	0.6350	[T/C]	BOT	BOT			0.925	0.453	0.048	0.406	2890	9808	0.9888	-0.3076		
1_111470371	5190	C	C	0.5296	5190		1	25	0	C	C	G	G	B	B	-	-	1	111470371	0.9176	1.0000	[T/G]	BOT	TOP			0.990	0.673	0.010	0.663	2041	15120	1.0000	-0.1491		
1_113034078	5190	C	C	0.4898	5190		1	26	0	C	C	G	G	B	B	-	-	1	113034078	0.8868	1.0000	[T/G]	BOT	TOP			0.973	0.922	0.038	0.884	2749	19700	0.9985	-0.3247		
1_113044737	5190	G	G	0.9010	5190		1	27	0	C	C	G	G	B	B	-	-	1	113044737	0.9100	1.0000	[A/G]	TOP	BOT			0.981	1.138	0.033	1.105	2680	24259	0.9985	0.1339		
1_113056157	5190	C	C	0.3868	5190		1	28	0	C	C	G	G	B	B	-	-	1	113056157	0.8004	1.0000	[T/G]	BOT	TOP			0.976	1.408	0.051	1.357	3163	29466	1.0000	-0.0599		
1_115037580	5190	G	G	0.9410	5190		1	29	0	G	G	G	G	B	B	-	-	1	115037580	0.9057	1.0000	[A/G]	TOP	TOP			0.969	0.597	0.028	0.569	2447	13184	0.9944	0.2157		
1_1168711	5190	G	G	0.7537	5190		1	30	0	G	G	G	G	B	B	-	-	1	1168711	0.8023	0.9241	[A/G]	TOP	TOP			0.977	1.502	0.053	1.449	3228	31381	1.0000	-0.0754		
1_11893843	5190	G	G	0.8717	5190		1	31	0	C	C	G	G	B	B	-	-	1	11893843	0.8840	1.0000	[C/G]	TOP	BOT			0.973	0.691	0.028	0.663	2241	15082	0.9953	-0.1704		
1_120138308	5190	A	A	0.8448	5190		1	32	0	T	T	T	T	A	A	-	-	1	120138308	0.8198	1.0000	[T/C]	BOT	BOT			0.020	1.948	1.888	0.060	46971	2971	0.0000	0.1260		
1_1209245	5190	C	C	0.5002	5190		1	33	0	C	C	G	G	A	A	-	-	1	1209245	0.8949	1.0000	[G/C]	BOT	TOP			0.010	0.901	0.887	0.013	21668	2214	0.0000	0.1904		
1_1244118	5190	G	G	0.7179	5190		1	34	0	G	G	G	G	B	B	-	-	1	1244118	0.7420	1.0000	[A/G]	TOP	TOP			0.977	1.514	0.052	1.462	3206	31648	0.9993	0.0103		
1_12793169	5190	A	A	0.5298	5190		1	35	0	A	A	A	A	A	A	-	-	X	12793169	0.9178	1.0000	[A/G]	TOP	TOP			0.004	0.836	0.831	0.005	21604	1662	0.0000	0.2608		
1_143787040	5190	-	-	0.0000	5190		1	36	0	-	-	-	-	-	-	-	-	1	143787040	0.0000	0.0000	[T/C]	BOT	BOT			0.479	1.533	0.792	0.741	20826	16863	0.8752	-0.2716		
1_144270299	5190	G	G	0.7665	5190		1	37	0	G	G	G	G	B	B	-	-	1	144270299	0.8102	0.9781	[A/G]	TOP	TOP			0.980	1.379	0.043	1.337	2960	29047	1.0000	0.0900		
1_149327618	5190	G	G	0.4735	5190		1	38	0	G	G	G	G	B	B	-	-	1	149327618	0.8738	0.9333	[A/G]	TOP	TOP			0.966	0.766	0.038	0.728	2730	16459	1.0000	0.0158		
1_149555179	5190	C	C	0.4197	5190		1	39	0	C	C	C	C	B	B	-	-	1	149555179	0.8293	1.0000	[A/C]	TOP	TOP			0.995	1.786	0.013	1.773	2331	38054	0.9994	0.1026		
1_149640924	5190	C	C	0.4451	5190		1	40	0	G	G	G	G	B	B	-	-	1	149640924	0.8507	1.0000	[T/G]	BOT	BOT			0.956	1.138	0.074	1.064	3642	23427	0.9962	-0.0798		
1_149769217	5190	A	A	0.4468	5190		1	41	0	T	T	A	A	A	A	-	-	1	149769217	0.8521	1.0000	[A/C]	TOP	BOT			0.071	1.249	1.123	0.126	28628	4202	0.0155	0.1138		
1_150551510	5190	G	G	0.6690	5190		1	42	0	G	G	G	G	B	B	-	-	1	150551510	0.7534	0.9805	[A/G]	TOP	TOP			0.960	1.354	0.080	1.273	3849	27750	1.0000	-0.2567		
1_150589756	5190	C	C	0.7734	5190		1	43	0	G	G	G	G	B	B	-	-	1	150589756	0.7738	1.0000	[T/G]	BOT	BOT			0.968	1.096	0.053	1.044	3136	22992	1.0000	-0.1725		
1_150649173	5190	G	G	0.3992	5190		1	44	0	G	G	G	G	B	B	-	-	1	150649173	0.8115	1.0000	[A/G]	TOP	TOP			0.983	1.595	0.042	1.554	2975	33536	1.0000	-0.1437		
1_152018355	5190	G	G	0.7638	5190		1	45	0	C	C	G	G	B	B	-	-	1	152018355	0.8085	1.0000	[A/G]	TOP	BOT			0.962	1.674	0.095	1.579	4258	34064	0.9847	-0.0659		
1_152512993	5190	G	G	0.3471	5190		1	46	0	G	G	G	G	B	B	-	-	1	152512993	0.7631	0.6897	[A/G]	TOP	TOP			0.957	1.482	0.094	1.388	4189	30118	1.0000	0.0741		
1_152514361	5190	G	G	0.2041	5190		1	47	0	G	G	G	G	B	B	-	-	1	152514361	0.5910	0.5534	[A/G]	TOP	TOP			0.708	1.685	0.557	1.128	15252	24820	0.9596	0.0712		
1_153281957	5190	G	G	0.7686	5190		1	48	0	G	G	G	G	B	B	-	-	1	153281957	0.8115	1.0000	[A/G]	TOP	TOP			0.978	1.432	0.048	1.385	3083	30042	1.0000	-0.0260		
1_156593177	5190	G	G	0.4813	5190		1	49	0	G	G	G	G	B	B	-	-	1	156593177	0.8800	1.0000	[A/G]	TOP	TOP			0.971	0.942	0.041	0.901	2838	20038	1.0000	0.1492		
1_156716766	5190	G	G	0.8982	5190		1	50	0	C	C	C	C	B	B	-	-	1	156716766	0.9073	1.0000	[T/C]	BOT	BOT			0.977	1.005	0.034	0.971	2685	21488	0.9958	-0.0727		
1_157013236	5190	G	G	0.8394	5190		1	51	0	G	G	C	C	B	B	-	-	1	157013236	0.8590	1.0000	[T/C]	BOT	TOP			0.961	1.034	0.060	0.974	3300	21550	0.9833	0.0499		
1_157084221	5190	G	G	0.8979	5190		1	52	0	G	G	G	G	B	B	-	-	1	157084221	0.9070	1.0000	[A/G]	TOP	TOP			0.986	0.818	0.018	0.800	2261	17951	1.0000	-0.0946		
1_158091588	5190	A	A	0.6744	5190		1	53	0	A	A	A	A	A	A	-	-	1	158091588	0.7564	1.0000	[A/G]	TOP	TOP			0.068	1.577	1.424	0.153	35862	4822	0.0000	-0.1991		
1_158519357	5190	G	G	0.7445	5190		1	54	0	C	C	C	C	B	B	-	-	1	158519357	0.7968	0.8981	[T/C]	BOT	BOT			0.979	1.146	0.037	1.109	2784	24335	1.0000	-0.2889		
1_159054708	5190	G	G	0.7070	5190		1	55	0	G	G	G	G	B	B	-	-	1	159054708	0.7748	0.9972	[A/G]	TOP	TOP			0.944	1.600	0.129	1.471	5055	31832	0.9986	-0.1401		
1_159359477	5190	G	G	0.7445	5190		1	56	0	G	G	G	G	B	B	-	-	1	159359477	0.7968	0.9083	[A/G]	TOP	TOP			0.979	1.363	0.043	1.320	2958	28699	1.0000	-0.0842		
1_159430210	5190	C	C	0.4596	5190		1	57	0	C	C	C	C	B	B	-	-	1	159430210	0.8626	0.8807	[A/C]	TOP	TOP			0.964	0.446	0.024	0.423	2315	10158	1.0000	0.4175		
1_159747336	5190	G	G	0.4777	5190		1	58	0	G	G	G	G	B	B	-	-	1	159747336	0.8771	1.0000	[A/G]	TOP	TOP			0.987	1.139	0.023	1.117	2429	24505	1.0000	-0.0638		
1_160148709	5190	C	C	0.5191	5190		1	59	0	G	G	C	C	B	B	-	-	1	160148709	0.9096	1.0000	[A/C]	TOP	BOT			0.977	1.043	0.036	1.007	2724	22244	0.9966	0.0069		
1_16597858	5190	G	G	0.6943	5190		1	60	0	G	G	C	C	B	B	-	-	1	16597858	0.7676	0.8458	[T/C]	BOT	TOP			0.929	0.783	0.079	0.704	3693	15987	0.9768	-0.0407		
1_167363130	5190	-	-	0.0000	5190		1	61	0	-	-	-	-	-	-	-	-	1	167363130	0.0000	0.0000	[A/G]	TOP	BOT			0.353	2.602	1.607	0.995	40425	22245	0.0000	0.1894		
1_169379114	5190	A	G	0.9454	5190		1	62	0	T	C	A	G	A	B	-	-	1	169379114	0.9111	1.0000	[A/G]	TOP	BOT			0.463	1.001	0.530	0.471	14469	11236	0.5050	0.1879		
1_169521212	5190	G	G	0.7987	5190		1	63	0	C	C	G	G	B	B	-	-	1	169521212	0.8308	0.8458	[A/G]	TOP	BOT			0.952	0.805	0.057	0.748	3180	16891	1.0000	0.1158		
1_170678325	5190	G	G	0.8943	5190		1	64	0	G	G	C	C	B	B	-	-	1	170678325	0.9037	1.0000	[T/C]	BOT	TOP			0.988	1.015	0.018	0.997	2306	22026	1.0000	0.2057		
1_170688829	5190	C	C	0.8485	5190		1	65	0	C	C	C	C	B	B	-	-	1	170688829	0.8225	1.0000	[A/C]	TOP	TOP			0.980	1.370	0.043	1.328	2952	28862	0.9990	-0.0197		
1_171745360	5190	T	T	0.5446	5190		1	66	0	A	A	T	T	B	B	-	-	1	171745360	0.9290	1.0000	[A/T]	TOP	BOT			0.997	0.621	0.003	0.619	1723	14180	1.0000	-0.1290		
1_171793211	5190	G	G	0.4069	5190		1	67	0	C	C	C	C	B	B	-	-	1	171793211	0.8183	1.0000	[T/C]	BOT	BOT			0.938	1.018	0.091	0.927	4034	20588	1.0000	-0.0368		
1_176780788	5190	A	G	0.3283	5190		1	68	0	T	C	T	C	A	B	-	-	1	176780788	0.5210	0.4052	[T/C]	BOT	BOT			0.620	1.973	0.798	1.175	21051	25838	0.5153	-0.0850		
1_177870317	5190	C	C	0.4481	5190		1	69	0	C	C	G	G	B	B	-	-	1	177870317	0.8532	0.7187	[T/G]	BOT	TOP			0.970	1.148	0.052	1.096	3137	24073	1.0000	0.1225		
1_178125067	5190	A	G	0.9366	5190		1	70	0	A	G	T	C	A	B	-	-	1	178125067	0.9005	1.0000	[T/C]	BOT	TOP			0.517	1.341	0.652	0.689	17448	15757	0.5114	0.1821		
1_183356179	5190	C	C	0.5236	5190		1	71	0	G	G	C	C	B	B	-	-	1	183356179	0.9130	1.0000	[A/C]	TOP	BOT			0.988	1.048	0.019	1.029	2337	22681	1.0000	-0.1001		
1_18680816	5190	G	G	0.8967	5190		1	72	0	C	C	C	C	B	B	-	-	1	18680816	0.9059	1.0000	[T/C]	BOT	BOT			0.993	0.866	0.010	0.856	2077	19102	1.0000	-0.2134		
1_1887682	5190	C	C	0.4128	5190		1	73	0	G	G	C	C	B	B	-	-	1	1887682	0.8234	1.0000	[A/C]	TOP	BOT			0.993	1.453	0.016	1.436	2338	31108	1.0000	-0.2278		
1_195024497	5190	-	-	0.0000	5190		1	74	0	-	-	-	-	-	-	-	-	1	195024497	0.0000	0.0000	[A/G]	TOP	TOP			0.841	1.143	0.233	0.911	7427	20281	1.0000	0.0199		
1_195193808	5190	C	C	0.5008	5190		1	75	0	G	G	G	G	B	B	-	-	1	195193808	0.8954	1.0000	[T/G]	BOT	BOT			0.978	0.579	0.020	0.560	2245	12986	1.0000	-0.1721		
1_196492101	5190	A	G	0.7719	5190		1	76	0	A	G	A	G	A	B	-	-	1	196492101	0.8136	1.0000	[A/G]	TOP	TOP			0.536	1.980	0.934	1.046	24287	23197	0.5072	0.0427		
1_196772454	5190	G	G	0.9352	5190		1	77	0	G	G	C	C	B	B	-	-	1	196772454	0.8990	1.0000	[T/C]	BOT	TOP			0.953	0.891	0.061	0.830	3303	18571	0.9812	0.1449		
1_198275504	5190	G	G	0.6651	5190		1	78	0	C	C	G	G	B	B	-	-	1	198275504	0.7512	1.0000	[A/G]	TOP	BOT			0.940	1.826	0.157	1.669	5761	35940	1.0000	-0.0552		
1_199282896	5190	T	T	0.4016	5190		1	79	0	A	A	A	A	B	B	-	-	1	199282896	0.8136	1.0000	[T/A]	BOT	BOT			0.986	1.852	0.039	1.812	2928	43697	1.0000	0.1410		
1_200463744	5190	C	C	0.4014	5190		1	80	0	C	C	C	C	A	A	-	-	1	200463744	0.8134	1.0000	[C/G]	TOP	TOP			0.014	1.431	1.400	0.031	33197	2686	0.0000	-0.0044		
1_201131303	5190	-	-	0.0000	5190		1	81	0	-	-	-	-	-	-	-	-	1	201131303	0.0000	0.0000	[A/G]	TOP	TOP			0.425	2.780	1.555	1.226	39214	27006	0.0000	0.0734		
1_201453573	5190	G	G	0.3317	5190		1	82	0	C	C	C	C	B	B	-	-	1	201453573	0.7478	0.9796	[T/C]	BOT	BOT			0.905	1.051	0.137	0.914	5141	20333	1.0000	-0.2863		
1_202690454	5190	T	T	0.3490	5190		1	83	0	T	T	A	A	B	B	-	-	1	202690454	0.7650	1.0000	[T/A]	BOT	TOP			0.952	1.374	0.097	1.277	4128	31323	1.0000	-0.0039		
1_203298249	5190	C	C	0.4922	5190		1	84	0	C	C	G	G	B	B	-	-	1	203298249	0.6548	0.9141	[T/G]	BOT	TOP			0.859	1.505	0.276	1.229	8544	26856	0.9803	-0.0969		
1_203492080	5190	A	A	0.9342	5190		1	85	0	A	A	A	A	A	A	-	-	1	203492080	0.8978	1.0000	[A/G]	TOP	TOP			0.028	1.093	1.047	0.046	26786	2539	0.0028	-0.0534		
1_20529353	5190	G	G	0.4078	5190		1	86	0	C	C	C	C	B	B	-	-	1	20529353	0.8190	1.0000	[T/C]	BOT	BOT			0.979	1.244	0.039	1.205	2846	26331	0.9963	-0.0897		
1_207867500	5190	C	C	0.3992	5190		1	87	0	C	C	C	C	B	B	-	-	1	207867500	0.8115	1.0000	[A/C]	TOP	TOP			0.975	1.342	0.050	1.292	3125	28119	1.0000	-0.2017		
1_20903554	5190	G	G	0.7673	5190		1	88	0	G	G	C	C	B	B	-	-	1	20903554	0.8107	0.9395	[T/C]	BOT	TOP			0.984	1.544	0.037	1.507	2858	32564	0.9970	0.0179		
1_211052215	5190	G	G	0.7772	5190		1	89	0	G	G	C	C	B	B	-	-	1	211052215	0.8868	0.7613	[T/C]	BOT	TOP			0.885	0.141	0.022	0.119	2210	3878	0.8871	-0.8563		
1_211076006	5190	G	G	0.4873	5190		1	90	0	G	G	G	G	B	B	-	-	1	211076006	0.8848	0.9976	[A/G]	TOP	TOP			0.969	1.133	0.053	1.080	3161	23742	1.0000	0.0952		
